PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0085s0024.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 522aa    MW: 55589.2 Da    PI: 7.0965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0085s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.2e-1088113227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C +++rtG C +G +C+F+H+p
  Sphfalx0085s0024.1.p  88 GEPDCVYYMRTGLCGFGQTCRFNHPP 113
                           5799********************97 PP

2zf-CCCH36.21e-11133158227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tGtCk+G++Ck++H++
  Sphfalx0085s0024.1.p 133 GQPECQYYLKTGTCKFGATCKYHHPR 158
                           789*********************96 PP

3zf-CCCH38.91.4e-12179204227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C +++rtG CkyG +CkF+H+p
  Sphfalx0085s0024.1.p 179 GEKECAYYMRTGSCKYGVTCKFHHPP 204
                           7899********************97 PP

4zf-CCCH35.81.3e-11342368127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG Ck+G +C+++H++
  Sphfalx0085s0024.1.p 342 PGQPECQYYMKTGDCKFGITCRYHHPK 368
                           5789*********************96 PP

5zf-CCCH29.61.2e-09390413326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            ++C+f+  +G+Ck+G++CkF H+
  Sphfalx0085s0024.1.p 390 APPCSFYNHYGICKFGPTCKFDHP 413
                           689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-586113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85986114IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-789113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-591114IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732131159IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9132158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4137159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948177205IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5177204IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10179204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6180203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5183202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774341369IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5341368IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5345369IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6387414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831387415IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-7390413IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEYYAPAKGA PSSFAGLESS GSESTGLAVL GSIQYDDWRG KHGAPSPGST TADTGPDGLA  60
EAVWQMTMQP HQEGIDAAGQ GQFPERLGEP DCVYYMRTGL CGFGQTCRFN HPPNRKMAAA  120
VARGKGDYPE RFGQPECQYY LKTGTCKFGA TCKYHHPRDQ AGSTGRVQLN GLGLPLRPGE  180
KECAYYMRTG SCKYGVTCKF HHPPVATFVS PHYTTTGAPT SPAPQPYPPG LPSWPMARAP  240
YLQPRLQGPS TYSPVLLPSH QGLVSVPAWN TYQGPVGPMT LPEGQQHPLG TSYLYGTLQQ  300
SDSGSVQGTY APYLQGSSAM GVPAIQPHNT NSQRDTIFPE RPGQPECQYY MKTGDCKFGI  360
TCRYHHPKDR AIPSPTCILS PMGLPLRPGA PPCSFYNHYG ICKFGPTCKF DHPLLGLTYS  420
PSASSLTDMP VAPYPTGLSP TALGPSPVEA PHEGPSGASS SNEPTAPSEE HPGLQQLRDG  480
SDLSVVSASA GATTTQDLST QATISGMGSR KDNQVESHEI P*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001768387.11e-160predicted protein, partial
SwissprotQ9SWF91e-143ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLC0PR621e-161C0PR62_PICSI; Putative uncharacterized protein
STRINGPP1S102_155V6.11e-164(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-122zinc finger protein 1